rnaends

Installation

  • Installation
  • Source code

Vignettes

  • Pre-processing functions (parse_reads or demultiplex) of 5’/3’-ends RNA-Seq data
  • TSS identification using 5’-end RNA-Seq data
  • Endonucleolytic cleavage site prediction using 5’-end RNA-Seq data
  • Co-translational exoribonucleolytic degradation profiling using 5’-end RNA-Seq data
  • 3’-end post-transcriptional modifications exploration and differential proportion analysis

Reference manual

  • DESCRIPTION
  • add_read_feature
  • demultiplex
  • differential_proportion
  • differential_proportion2
  • .parse_yield
  • .trim_yield
  • FFT_profile
  • FFT
  • frame_preference
  • init_read_features
  • load_bam_as_tibble
  • map_fastq_files
  • map_fastq
  • map_stats_bam_files
  • map_stats
  • metacounts_feature
  • metacounts_normalized
  • metacounts_region
  • parse_reads
  • plot.feature_metacounts
  • plot.frame_preference
  • plot.metacounts_periodicity
  • print.read_features
  • quantify_3prime
  • quantify_5prime
  • quantify_downstream
  • quantify_from_bam_files
  • read_feature_pattern_types
  • reads_parse_report_ggupset
  • reads_parse_report_to_upsetr_expression
  • summarise_alignements
  • TSS_betabinomial
  • TSS

About

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rnaends
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© Copyright 2024, Roland Barriot, Tomas Caetano, Gwennaele Fichant, Peter Redder.

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